PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010934646.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 190aa    MW: 21479.3 Da    PI: 7.8486
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010934646.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.83.7e-084364526
                    --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                     Cr f++ G+C++G +C +aHg
  XP_010934646.1 43 ACREFRQKGECPRGHNCEYAHG 64
                    5********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.0943866IPR000571Zinc finger, CCCH-type
SMARTSM003560.00113865IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.67E-63869IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-64364IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-64467IPR000571Zinc finger, CCCH-type
SMARTSM00356127497IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MYIYKVKRCS KTKSHDWTEC PYAHHGEKAR RRDPNRYPYS GIACREFRQK GECPRGHNCE  60
YAHGVFEFWL HPTRYRTRVC DAGDACTRRV CFFAHTPEQL RPVVIRDCFR CGIGGCVAKS  120
SWRGMPAMAA VAAAAACSSF HAGMNEVNGN DLVGGDGEWF DFPHLDWVEE LLTEKGEGEV  180
GLGVDWGVKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010934646.11e-141PREDICTED: zinc finger CCCH domain-containing protein 54
SwissprotO650362e-48C3H54_ARATH; Zinc finger CCCH domain-containing protein 54
SwissprotP937554e-47C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A0K9Q4D89e-56A0A0K9Q4D8_Z
STRINGVIT_16s0013g00870.t012e-47(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07500.12e-49C3H family protein